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Index slides en cursus bio-informatica

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Course
Bio-informatica

Institution
Universiteit Antwerpen (UA)

Korte overzicht, index, lijst die alle paginanummers weergeeft over een bepaald onderwerp om deze snel te vinden in een openboek examen. Specifiek over de slides en cursus van bio-informatica.

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Uploaded on November 30, 2021
Number of pages 3
Written in 2020/2021
Type Other
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index
lijst
excel
tabel
paginanummer
openboek
examen
open boek
bio informatica
bioinformatica
opsomming

Institution
Universiteit Antwerpen (UA)
Education
Biomedische Wetenschappen
Course
Bio-informatica

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Indexen bio-informatica

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1. Other - Index practica bio-informatica
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Hoofdstuk Onderwerpen Slides Boek pagina's
H1: Intro 7- 28
H2: Background in  Database organisation  6  29-30
computer sciences  Relational databases  7-8  31
 Algorithms  9-14  32-37
 Classification problems  33  38
 Confusion matrix  35-39  39-42
 ROC  40-41  42
 Graph theory  43- 58  42-51
 Different types of graphs  44--51  42-45
 Adjacency matrix  46  46
 Adjacency list  47  46
 Brute force algorithm  63  51-52
 Big-O-notation  65-68  53
 Complexity classes  69-72  53-54
 Exhaustive vs. heuristic  73  54-55
 Search, decision and optimization  74-91  55-59
problems/algorithms
 Iterative improvement  82-87  58-59
H3: Pairwise  Match/mismatch/hamming distance  7  64-67
alignment  Substitution matrix and alignment score  17-22  67-72
o Gap penalties  23-25  72-73
 Global vs. local pairwise alignment  32  75
 Definitions: similarity/identity/conservation  35-39  77
 /Homologs/orthologs/paralogs/xenologs/
analogs
 Dot matrix of dotplot  44-50  78-81
o EMBOSS dotplot  50-54  81
 Global alignment  55-80  81-93
o Needleman-Wunsch  59-80  84-93
 Local alignment  82-91  93-96
o Smith-Waterman
 Advanced penalties  92-93  97
 Substitution matrices  97-114  98-101
o PAM  115-141  102-106
o Blosum  142-150  106-108
o PAM vs. Blosum  151-154  108
H4: Multiple  Use MSA  6-15  111
alignment (MSA)  MSA as a graph  20-24
 Dynamic methods (exhaustive)  25-37  115-120
o Lipman MSA algorithm  29-30  117-118
o Scoring multiple alignment  31-37  118-120
 Progressive methods (heuristic)  39-49  121-125
o Feng-Doolittle algorithm  41-45  121-122
o Clustal W  46-49  122-125
 Iterative methods  51-58  125-130
o MAFFT  57  126-127
o MUSLE  53-56  127-128
o SAGA  58  128-130
 Consistency-based methods  60-67  130-132
o ProbCons  61  130-131

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