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Atoms, orbitals and Bonds

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  • December 9, 2023
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Atoms Orbitals and Bonding
Elements of Human Body

Humans require 25 elements for healthy life- to create all blood, bone, muscle, and other tissue- ‘ESSESNTIAL
element’
4 elements- Hydrogen, Carbon, Oxygen, and Nitrogen – make up
almost 97% of total body mass




Atoms- Revision

Period- horizonal rows
Groups- vertical columns
Mendeleev- elements which fall in same groups tend to exhibit similar physical and chemical properties- these
properties follow regular pattern of change
Atom- smallest unit in which an element can exist
- smallest particle into which element can be divided while still retaining properties of element
Atoms make up molecules. There are three of types of subatomic particles- protons, neutrons and electrons

 Protons carry single POSITIVE charge
 Electrons carry single NEGATIVE charge
 Neutrons DON’T CARRY charge

In biology, nervous system consists of complicated network of nerve cells- use
electrical charge to transmit nerve impulses throughout body.

Atomic Number- number of protons (equal to number of
electrons for an atom)
Mass Number- approximately sum of protons and neutrons

Atom is a neutral particle- contains exactly same number of
protons and electrons

Periodicity- Incremental changes in physical and chemical properties across period or group
Element- single, simple substance that can’t be split into any more separate substance by any chemical means

Atoms to ions – Revision

Atoms of element- uncharged- number of protons and electrons is equal
Ions- formed when number of electrons different from number of protons

 Anion- formed when atom GAINS an electron- NEGATIVE CHARGE- contains more electrons than protons
 Cation- formed when atom LOSES an electron- POSITIVE CHARGE- contains more protons than electrons

,Magnitude of charge will depend on number of electrons GAINED or LOST
- Losing single electron- CATION with charge of +1
e.g. Na+, Mg2+, Cl-, S2-
- Losing two electrons- CATION with charge of +2

Readiness with which atom GAINS/ LOSES electrons dictates its reactivity- elements whose atoms gains/ loses readily
tend to be very reactive

 Number of protons is CONSTANT for any element
 Number of neutrons can VARY- gives RISE to ISOTOPES- relevant to radioactive decay
 Number of protons doesn’t VARY for given element- determines CHEMICAL IDENTITY of
element

Isotopes

Isotopes- Atoms that have same number of protons and electrons but different number of
neutrons
Atoms of hydrogen contain NO neutrons at all- Hydrogen exists as two isotopes
- 1 Proton, 1 Electron, 0 Neutron- Denoted 1H
- 1 Proton, 1 Electron, 1 Neutron- Deuterium- 2H

 Element’s atomic weight (Relative Atomic Mass)- measure of the average mass of
an atom of that element
 Element’s atomic mass- mass of single atom of single, specific isotope

Atomic Structure

 Each atom has a NUCLEUS at its centre
- Diameter of nucleus is ~ 10000X smaller than diameter of atom
 Nucleus contains protons and neutrons
 Space around nucleus- much bigger- contains electrons
- Electrons move around nucleus continually- form ELECTRON ‘CLOUD’
- Electrons move within very specific regions of atom – ‘ORBITALS’- electrons move freely within an orbital

Protons and neutrons make up all the mass of atom- occupy only tiny fraction of its volume

Atomic orbitals

 Electrons occupy different types of orbitals- s, p, d and f
 These orbitals differ in their SHAPES and their proximity (nearness) to nucleus
 Orbitals can have more than 1 lobe- Other than s-orbitals which always have 1 lobe

Orbitals are grouped into shells, identified by number:
- Shell 1 contains 1s orbital
- Shell 2 contains 1s orbital and 3 p orbitals
- Shell 3 contains 1s orbital, 3p orbitals and 5d orbitals
- Shell 4 contains 1s orbital, 3p orbitals, 5d orbitals and 7f
orbitals

Subshell- Group of equivalent orbitals occupying same shell ( 3
p orbitals in shell 3)

, Summary

 Structure of atom is small nucleus surrounded by larger- diffuse area made of orbitals
 Nucleus contains PROTONS and NEUTRONS (heavy)
 Orbitals describe probability of finding electron in certain place (light)
 Protons carry +1 charge, Electrons carry -1 charge, Neutrons are neutral
 Atoms can GAIN or LOSE electrons- become ions which can carry
a charge
 Number of protons in given element doesn’t change
 There are 4 types of orbitals- arranged in shells and subshells

Orbital Occupancy

Any orbital can hold up a max of 2 electrons- Pauli Exclusion Principle
- Therefore, shell 1 can hold only 2 electrons- has 1s orbitals

As the electron number increases- electrons are forced to occupy orbitals of
progressively higher energy- orbitals lie further away from nucleus

Restriction in orbital occupancy leads to diffuse nature of ‘electron clouds’

 Energies of all orbitals isn’t same- important consequences for reactivity
 First approximation - orbitals that are close to nucleus have lower energy
- orbitals that are further away from nucleus in space
have higher energies

Filling up Orbitals

 Energy of electron is equivalent to energy of orbital in which its located
- electron in 3s orbital has more energy than electron in 2p orbital
 Electrons fill up orbitals according to their energy- starting with orbitals with lowest
energy – Aufbau Principle

Entities with lower energy are MORE STABLE than those with higher energy
Atom is most stable if its electrons have lowest energy possible
Electrons fill up lowest energy orbitals first- enter higher energy orbitals if lower energy orbitals are full.

Shells 1 to 4 posses progressively higher energies- shell 1- lowest energy
- shell 4- highest energy
s, p and d orbitals within same shell possess progressively higher energies- s orbitals are lowest energy
- d orbitals are highest energy

 Orbitals in same subshell have same energy- DEGENERATE
- In shell 2, 3 x p orbitals will have same energy
 Hund’s rule- equivalent orbitals are filled with one electron, before second electron enters.

4s orbital fills before than 3d orbital- 4s orbital is of slightly lower energy than 3d orbital
Atom is most stable if its electrons have the lowest energy possible- electrons locate themselves as close to the
nucleus

Summary of electrons in Orbitals

 Aufbau Principle- Electrons fill orbitals of progressively higher energy
 Pauli Exclusion Principle- Orbital contains no more than two electrons

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