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Behaviour of biomolecules Lecture notes: Introduction to ligand binding

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BSc Biomedical Sciences Behaviour of biomolecules Lecture notes: Introduction to ligand binding

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  • November 7, 2023
  • 5
  • 2017/2018
  • Lecture notes
  • Declan doyle
  • Introduction to ligand binding
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shenelshekerzade99
Behaviour of biomolecules BIOL1021.

Lecture 1 Declan Doyle.

Thermodynamics recap.

All molecular processes are governed by laws of thermodynamics and kinetics.
Thermodynamics refers to the energetics of a chemical reaction.
Thermodynamics provides a powerful framework within which the behaviour of biological
systems can be predicted. For example, whether a process will need heat.

First law of thermodynamics = Heat is a form of energy. Energy is always conserved – it
cannot be created or destroyed, only converted from one form into another! The sum of
energies of a system and its surroundings remains constant.
 a real example of this is a dam or waterfall.

Stored energy  kinetic energy  mechanical energy  electrical energy.


Note here that the total
sum of energy remains
constant. There is only
transferral of energy from
one form to another.
Energy is not being created
or destroyed.

, Energy changes during chemical reactions.

During a chemical reaction, the internal energy, U, may change. But the pressure, p, and/or
the volume V, may also change.
Energy derived from pressure and volume changes is given by E = p * V.

Energy forms.

Kinetic energy – the energy of a body or a system with respect to the motion of the body or
of the particles in the system.
- Kinetic energy is related to temperature.

Potential energy – the stored energy in an object or system because of its position or
configuration.
- Chemical bond energy is the energy stored in chemical bonds.
- Bond formation releases energy (exothermic reaction).
- Bond cleavage requires energy (endothermic reaction).

Endothermic and exothermic reactions.

 Endothermic: energy absorbed from surroundings to break bonds.
 Exothermic: energy released into the surroundings from bond formation.
 This should not be confused with spontaneity!
 Heat flowing into a system from its surroundings is defined as positive (+q)
 A process that absorbs head from surroundings is endothermic
 So the system gains heat, meaning the surrounding cool down.

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