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Biol 310 Exam 3 Verified Answers (2025)!!

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  • BIOL 310
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  • BIOL 310

BIOL 310 Study Material – Comprehensive & High-Quality Notes! Ace your BIOL 310 course with this well-organized and detailed study material! Perfect for students looking to save time, boost their grades, and understand key concepts quickly. What’s Included? Detailed Lecture Notes – C...

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  • February 12, 2025
  • 33
  • 2024/2025
  • Exam (elaborations)
  • Questions & answers
  • BIOL 310
  • BIOL 310
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Q/As




Biol 310 Exam 3 Verified Answers
(2025)!!



vesicular transport - Answers movement of lipids and proteins
between several cellualr components involves vesicular transport



shekman - Answers -ID'd machinery through yeast genetics

-screened for temperature sensitive, secretion defective yeast mutants

-categorized mutants by their "roadblock" phenotypes using transmission
electron microscopy

-identified broken gene

-"lots of vesicles" phenotype: sec; secretory defective



rothman: ER->golgi transit N-linked oligosaccharide processing -
Answers -endoglycosidase D:

-does nothing with Man8 (ER)

-cleaves with Man5 (Golgi)

-anti-VSV G and western blot used




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, Q/As
rothman: is transport between cellular components possible after cell
homogenization - Answers -homogenize cells

-infected wild-type: N-acetyl glucosamine transferase

-infected mutat: no N-acetyl glucosamine added

-fusing uninfected wild type and infected mutant->n-acetyl glucosylated
VSV G protein

-repeat with biochemically fractionated cytoplasm, with mutations in other
glycosylation enzymes, and with chemical inhibitors (non-hydrolysable
GTP)



with nonhydrolysable GTP - Answers -an accumulation of distinct
classes of "coated vesicles"

1. suggested GTP hydrolysis is involved in the uncoating step

2. provided a source of biochemically enriched vesicles for analysis

-ARF associates with GEF at membrane

-ARF GTP recruits coat proteins

-ARF GDP triggers uncoating



vesicle budding basics - Answers -localized GEF recruits and
activated monomeric GTPase

-bound GTPase recruits cytosolic proteins

-coat proteins sculpt membrane and recruit cargo and snares

-types of coated vesicles: COPII, COPI, and clathrin




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, Q/As
COPII vesicles - Answers -Sar1: another monomeric
GTPase+localized GEF (at membrane)

-inactive, soluble Sar1-GDP has hidden amphiphillic helix

-Sar1-GEF makes Sar1-GTP and associated with membrane (due to
exposed amphiphillic helix)

-binds to dimer Sec24 and Sec23 which binds to cargo and bends vesicle



sorting sequences - Answers -how are cargo proteins selected

-cytoplasmic sequences: transmembrane proteins

-luminal sequences: bind cargo-receptor protein)



self-assembling sec13/sec31 - Answers -coat assembly sculpts 50
nm vesicles

-coated vesicles detach from donor membrane

-then, with GTP hydrolysis, "tail" rtracts

-coat detaches



why must the coat come off - Answers -vesicles have cargo and
essential targeting proteins

-naked vesicles with exposed SNAREs fuse with next compartment

-sec23/sec24 act as GAP for Sar-1

-state of Sar-1 depends on relative levels of sec12 (Sar GEF) and Sec23
(GAP activity)

-GAP activity increases 10x after Sec13/31 binds->Sar1 is no longer near
Sec12 (GEF)


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, Q/As


SNARE and Rab mechanism - Answers -Rab-GTP binds to Rab
effector on target membrane (tethering protein; encourages hydrolyzing)

-docking

-v-SNARE binds to trans-SNARE complex

-fusion

-Rab becomes GDP and binds to GDI (inhibitor) and cargo is released

-usually 1 v-SNARE and 3 t-SNAREs (need 4 alpha helices)

-Rabs accelerate fusion



thermodynamics of SNAREs - Answers -@1.5 nm, fusion is
energetically favorable

-clear other membrane proteins

-squeeze out H2O

-coiled the coiled-coil

-SNARE proteins provide a hydrophobic surface for formation of lipid bridge



after fusion of vesicle - Answers NSF and ATP required to uncoil
SNARE so v-SNAREs can be recycled back to donor membrane



how do v-SNARES go back to donor membrane - Answers -COPI
coated vesicle

-also brings back missorted ER resident proteins (like BiP0




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