100% satisfaction guarantee Immediately available after payment Both online and in PDF No strings attached
logo-home
BIOL 4100 EXAM 5 QUESTIONS AND ANSWERS WITH COMPLETE SOLUTIONS VERIFIED £8.91
Add to cart

Exam (elaborations)

BIOL 4100 EXAM 5 QUESTIONS AND ANSWERS WITH COMPLETE SOLUTIONS VERIFIED

 3 views  0 purchase
  • Module
  • Institution

BIOL 4100 EXAM 5 QUESTIONS AND ANSWERS WITH COMPLETE SOLUTIONS VERIFIED what goes into the cellular garbage systems? misfolded, unused, turnover proteins; metabolic products; organelles describe the cellular garbage system substrate enters cells through endocytosis; either ubiquitin added from ...

[Show more]

Preview 4 out of 34  pages

  • December 3, 2024
  • 34
  • 2024/2025
  • Exam (elaborations)
  • Questions & answers
avatar-seller
BIOL 4100 EXAM 5 QUESTIONS AND ANSWERS WITH

COMPLETE SOLUTIONS VERIFIED

what goes into the cellular garbage systems?

misfolded, unused, turnover proteins; metabolic products; organelles

describe the cellular garbage system

substrate enters cells through endocytosis; either ubiquitin added from free pool and

goes through proteasome with epoximicin/lactacystin to break up substrate OR ubiquitin

is added to mitochondria and exposed to Wortmannin/bafilomyocin to go through

autophagy OR endocytosized substrate exposed to wortmannin/bafilomycin which

becomes lysosome

consequences of impaired protein degradation

protein aggregates (group up--body can't get rid of easily), ubiquitinated inclusions,

vacuolation (paraptosis--cell death process/formation of vacuoles), damaged

organelles, impairment of cellular processes, cell death

impaired protein degradation is the _____ ________ of degenerative diseases

such as neurodegeneration, muscle and liver degeneration, lung disease and

aging

underlying pathogenesis

-turnover of individual protein is/is not constant. what is an ex of this?

-half lives of proteins can vary from _____ to _____

-what is normal protein half life?

is not (proteins we need aren't degraded), minutes to infinity, 100-200 minutes

,how are short and long lived proteins different?

short=regulatory proteins, enzymes that catalyze committed steps in cellular processes,

transcription factors (turn on/off quickly); long=structural proteins (actin), nuclear pore

proteins, histones (

protein degradation may depend on _____ _______.

is a _____ process.

works with ______ or _____ proteins

tissue distribution, regulated, faulty/damaged

most protein degradation--80-90%--happens through _____/_____ pathway. 10-

20% happens through ____/_______ pathway.

ubiquitin/proteasome, endosomal/lysosomal

name the protein degradation pathway

-80-90% of protein degradation

-most intracellular proteins

-mostly protein driven

-excess/misfolded proteins

ubiquitin/proteasome pathway

name the protein degradation pathway

-10-20% of protein degradation

-extracellular proteins (endocytosis)

-cellular organelles/larger groups of molecules

-"some" intracellular proteins

endosomal/lysosomal pathway

,how are individual proteins selected for degradation?

chosen because they get modified by addition of ubiquitin to 3' structure

ubiquitin is a ________ _______ 76 amino acid polypeptide with a molecular

weight of 8.5 kD

-it is conserved across all species of _____ (96%)

-structurally characterized by presence of what?

highly conserved, eukaryotes, one alpha helix, 5 beta sheets and 4 aa carboxyl tail

domain (LRGG--leucine, arginine, glycine, glycine) with Glycine 76 very last

what are the 7 lysine residues in ubiquitin? where do they reside?

Lys63, 48, 29, 27, 6, 11, and 33; on outside of structure

what is monoubiquitination (or multi mono) involved in?

K48, K11, maybe K27/29 polyubiquitination involved in?

K63 polyubiquitination?

transcription, endocytosis, trafficking (some type of cell regulation); proteasomal

targeting; signaling (NFkB activation), DNA repair, endocytosis (lysosomal targeting)

when talking about ubiquitin modification, we assume _____ linkage? ubiquitin is

always added to lysine residues using _______. how is the shape of the ubiquitin

chain decided?

homologous, G76, which lysine group is built off of

do different shaped ubiquitin chains have different functions?

yes

what are the 3 parts of the ubiquitin pathway and what is it called?

, E1 ubiquitin activating enzyme, E2 ubiquitin conjugating enzyme, E3 ubiquitin protein

ligase

describe the general steps of ubiquitin pathway

E1+Ub+ATP yields E1/Ub+ AMP+Pi add E2; yields E1 and E2 bound to Ub; binds to E3

with bound substrate; ubiquitin binds to substrate on E3; substrate released from E3

and further ubiquitination

ubiquitin activating enzyme 1:

1. E1 activates the C-terminus of ubiquitin by forming an ____ _____ intermediate

2. catalytic ______ residue "attacks" the ubiquitin causing release of AMP and

formation of what?

3. reaction is ____ as another ubiquitin is adenylated and the charged ubiquitin is

transferred to an ___ forming another thioester bond

-extremely _______ enzyme--turnover rate is 1-2/second

acyl-adenylate, cysteine, formation of an E1 ubiquitin thioester intermediate, repeated,

E2, efficient

why does the E1 reaction have to be very efficient?is this reaction ATP

dependent? why?

because there aren't many E1s, yes, loosing double Pi with energy required to add Ub

ubiquitin conjugation enzyme E2:

1. carries activated ubiquitin for the E1 to the ____

2. each _____ ____ has a Cys residuce located in a shallow groove at its active

site which will form a thioester bond with the ubiquiting molecule being _______

The benefits of buying summaries with Stuvia:

Guaranteed quality through customer reviews

Guaranteed quality through customer reviews

Stuvia customers have reviewed more than 700,000 summaries. This how you know that you are buying the best documents.

Quick and easy check-out

Quick and easy check-out

You can quickly pay through credit card for the summaries. There is no membership needed.

Focus on what matters

Focus on what matters

Your fellow students write the study notes themselves, which is why the documents are always reliable and up-to-date. This ensures you quickly get to the core!

Frequently asked questions

What do I get when I buy this document?

You get a PDF, available immediately after your purchase. The purchased document is accessible anytime, anywhere and indefinitely through your profile.

Satisfaction guarantee: how does it work?

Our satisfaction guarantee ensures that you always find a study document that suits you well. You fill out a form, and our customer service team takes care of the rest.

Who am I buying these notes from?

Stuvia is a marketplace, so you are not buying this document from us, but from seller NurseAdvocate. Stuvia facilitates payment to the seller.

Will I be stuck with a subscription?

No, you only buy these notes for £8.91. You're not tied to anything after your purchase.

Can Stuvia be trusted?

4.6 stars on Google & Trustpilot (+1000 reviews)

56326 documents were sold in the last 30 days

Founded in 2010, the go-to place to buy revision notes and other study material for 14 years now

Start selling
£8.91
  • (0)
Add to cart
Added