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Biochemistry Module - Biochemistry 1st year

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Biochemistry Module - first class degree notes providing straightforward revision for exams. Comprehensive and excellent Biochemistry Module Notes to improve your grades. These notes cover the entire module, including extra reading, to enhance learning and results. I used these notes alone to prepa...

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  • June 18, 2020
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  • 2016/2017
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Biochemistry 2
Biomolecular structures - LIPIDS

Definition - Multiple hydrocarbon groups and few oxygen or polar groups
 Often called FATS but also includes OILS
 Heterogeneous group

Properties
 insolubility in water
 soluble in non-polar solvents such as chloroform, hydrocarbons, benzene etc.
proteins (enzymes that catalyst the reactions) don’t like being in an aqueous environment.

Why are they important
 Energy store
 Membrane structure
 Hormones and signaling compounds – derived from cholesterol and signal over short ranges

Lipids can be grouped into:
 Complex lipids - most common in nature. e.g. phospholipids
 Simple lipids - small proportion but many have specific functions. e.g. cholesterol, prostacyclin


Complex Lipids

Made from other smaller components put together

Major part is made of FATTY ACIDS




Nomenclature of fatty acids

SYSTEMATIC NAMES - Number of carbons in chain (in Latin) with ‘-oic acid’ on end or ‘-oate’ if ionised
form.
 If there are double bonds these are indicated with a number. e.g. cis-9-hexadecanoate
 The double bond is between the 9th and 10th carbons starting the numbering from the carboxyl
carbon

COMMON NAMES - Appear to be random but often relate to the source from which the fatty acid was first
isolated. e.g. palmitate from palm oil

, Complex Lipids – Triacyl Glycerols




Complex Lipids – Phospholipids




Fatty Acid chain length and double bonds

, Chain length has a significant effect on the extent of inter-chain interaction
 Longer chain - more interaction
 Double bonds also significantly affect the inter-chain interaction
 Double bonds - less interaction
 The extent of interaction has an effect on the fluidity of bilayers
 Hence organisms vary widely in the composition of the FAs that they contain within their membrane
forming lipids
 The composition reflects a number of things including growth temperature and membrane function


AMPHIPATHIC molecules
 Sometimes termed 'SCHIZOPHRENIC' molecules
 Free fatty acids, phospholipids, glycolipids, sphingolipids, ceramides etc are amphipathic
 Such molecules when added to water form a monolayer with the hydrophobic hydrocarbon chains
projecting from the water
 Vigorous shaking can produce micelles
 The process is not driven by free energy but by entropy
 Close packing of hydrocarbon tails excludes water leading to an increase in entropy
 Bilayers can also form from this type of molecule
 Vigorous shaking of bilayers produces liposomes, which are much larger than micelles
 Triacylglycerols are neutral and hence are NOT amphipathic
 Triacylglycerols pack closely to exclude water, so taking up less space – ideal for a concentrated energy
store

Introduction to lipid metabolism

Fatty acids are the most common lipid molecules
Fatty acids can be metabolised to release energy and generate ATP

Where do the Fatty acids come from?
Diet – about 30-40% of calories are from fatty acids
Adipose tissue – fat storage cells can release fat when needed
De novo synthesis – made from carbohydrates and some amino acids

Digestion of fats begins in the small intestine Requires input from two other organs
LIVER & PANCREAS


LIVER
 Liver produces and releases, via the gall bladder, BILE
 Bile contains a number of slightly
different compounds, called bile
acids & bile salts, derived from
cholesterol - these act as detergents
emulsifying the lipids and forming
small droplets of fat




PANCREAS

, Pancreas produces digestive enzymes and bicarbonate solution
- the enzymes involved in fat digestion are called LIPASES

Action of pancreatic lipases
Triacylglycerol lipase
Catalyses the hydrolysis of triacylglycerols at their 1 & 3 positions
Triacylglycerol (95% of dietary fat)
1,2 diacylglycerol + fatty acid
2 acylglycerol + fatty acid


Triacylglycerol lipase
 At the water-lipid interface so surface area for lipase to attach to is important
 Fatty acids and 2 acylglycerol are then able to diffuse in to intestinal epithelial cells .i.e. cells lining the
intestine
 Once inside the cells these components are reconstituted into triacylglycerols




Phospholipase A2

Acts upon phospholipids to aid their digestion by removal of the fatty
acid residue from position C2




TRANSPORT OF LIPIDS
 Lipoprotein complexes are used to transport the majority of lipids in the blood stream
 The complexes are classified by density but there is overlap in composition from one type to the next




Lipoprotein complexes
 Essentially, lipid droplets surrounded by proteins and
phospholipids that make them soluble in blood
 Some free fatty acids can be transported in blood,
solubilised by binding to serum albumin




LIPOPROTEIN LIPASE
 Present on capillary surfaces of the tissues that absorb lipid from the blood .i.e. mammary, muscle and
adipose tissues
 The enzyme is activated by the Apo-CII component of chylomicrons
 This is able to breakdown the triacylglycerols into fatty acids and monoacylglycerol
 These are able to diffuse out of the chylomicrons and in to the cells of the tissue

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