Biochemistry Lecture and Exam Notes for Imperial College Students
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Protein Science Notes (Mass spectrometry & Glycolysation)
Second year student studying for a Biochemistry/Biotechnology degree Content: - Protein dynamics by NMR - Mass Spectrometry in great detail (includes ionisation sources, schematic diagrams, types of Mass spec like Quadrupole mass filters, etc.) - Parts of a mass spectrometer (Mass analyser, etc.) - Performance characteristics of each type of mass spectrometry - Types of ion detectors in its details - How to read Mass spec data (molecular ions/ fragmented ions and y ion/ b ion pathway)...
- Lecture notes
- • 40 pages •
Second year student studying for a Biochemistry/Biotechnology degree Content: - Protein dynamics by NMR - Mass Spectrometry in great detail (includes ionisation sources, schematic diagrams, types of Mass spec like Quadrupole mass filters, etc.) - Parts of a mass spectrometer (Mass analyser, etc.) - Performance characteristics of each type of mass spectrometry - Types of ion detectors in its details - How to read Mass spec data (molecular ions/ fragmented ions and y ion/ b ion pathway)...
Bioinformatics Lecture 1 Notes
Bioinformatics Lecture 1 Notes Second year student studying for a Biochemistry/Biotechnology degree Content: - Introduction to the course - Annotating sequences - Global/ Pairwise alignments - BLAST output - Substitution/ PAM/ BLOSUM matrix - Log odds - Deriving Matrix scores - Simplifying scores
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- Lecture notes
- • 6 pages •
Bioinformatics Lecture 1 Notes Second year student studying for a Biochemistry/Biotechnology degree Content: - Introduction to the course - Annotating sequences - Global/ Pairwise alignments - BLAST output - Substitution/ PAM/ BLOSUM matrix - Log odds - Deriving Matrix scores - Simplifying scores
Bioinformatics Lecture 2 Notes
Bioinformatics Lecture 2 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Focussed Scoring Methods - Position-Specific Scoring Matrices (PSSM) including examples of matrices & using PSSM with PSI-BLAST - Pseudocounts - Protein domains and Functional sites - MSA ClustalO Output - PROSITE
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- Lecture notes
- • 5 pages •
Bioinformatics Lecture 2 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Focussed Scoring Methods - Position-Specific Scoring Matrices (PSSM) including examples of matrices & using PSSM with PSI-BLAST - Pseudocounts - Protein domains and Functional sites - MSA ClustalO Output - PROSITE
Bioinformatics Lecture 4 Notes
Bioinformatics Lecture 4 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Fold prediction - Prediction by Homology - Phyre - Phylogenetic trees - Tree building programs: Distance based method, Bootstrapping, Maximum Parsimony.
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- Lecture notes
- • 1 pages •
Bioinformatics Lecture 4 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Fold prediction - Prediction by Homology - Phyre - Phylogenetic trees - Tree building programs: Distance based method, Bootstrapping, Maximum Parsimony.
Bioinformatics Lecture 3 Notes
Bioinformatics module Lecture 3 For a Second year student studying a Biochemistry/Biotechnology degree Content - Hidden Markov Models – HMM - Protein Structure Prediction - Intro to Secondary Structure Prediction - Jpred Algorithm - 2 types of networks (Sequence to structure, Structure to structure)
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- Lecture notes
- • 1 pages •
Bioinformatics module Lecture 3 For a Second year student studying a Biochemistry/Biotechnology degree Content - Hidden Markov Models – HMM - Protein Structure Prediction - Intro to Secondary Structure Prediction - Jpred Algorithm - 2 types of networks (Sequence to structure, Structure to structure)
Bioinformatics Lecture 4 Notes
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Bioinformatics Lecture 3 Notes